SNP Profiles of RB 37   View Data

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 Key

 1234567891011121314
_Input profile
CCAACCCCCTAATTGGCTTTAAGGCCAA
1._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
2._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
3._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
4._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
5._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
6._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
7._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
8._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
9._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
10._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
11._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
12._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
13._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
14._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
15._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
16._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
17._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
18._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
19._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
20._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
21._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
22._RB_37_[BRA]
CCAACCCTCCAATTGGTT_AAGGCTAA
23._RUQ_1705
__CC____GG_TT_GG_AA
24._RB_37_[BRA]
_AACCCCCCAATTGGTT_AAGGCTAA
25._RUQ_135
CCAGCCCCCCAATTGGCTCTAAGGCTAA
26._GC-01-43-2-20
GGAAGGGGAGAAAACC__AAGGGGAA
27._GC-01-43-2-20
GGAAGGGGAG_AACC__AAGGGGAA
 1516171819202122232425262728
_Input profile
CCAAGGTTTTGGGGAACCACGGGGCCCC
1._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
2._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
3._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
4._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
5._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
6._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
7._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
8._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
9._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
10._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
11._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
12._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
13._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
14._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
15._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
16._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
17._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
18._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
19._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
20._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
21._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
22._RB_37_[BRA]
CCAACGCTTTGGGGAACCCCGGGGCCAC
23._RUQ_1705
_____GGGGAA_CCGG__AA
24._RB_37_[BRA]
CCAACGCTTTGGGGAACCCCGG_CCAC
25._RUQ_135
CCAACGCTCTGGGGAACCCCGGGGCCAC
26._GC-01-43-2-20
GGAAGGAAAACCCC_GGACCGCC_CC
27._GC-01-43-2-20
GGAAGGAAAACCCC_GGACCGCC_CC
 293031323334353637383940  
_Input profile
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
1._RB_37_[BRA]
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
2._GC-01-043-2-20
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
3._GC-01-043-2-20
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
4._GC-01-043-2-20
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
5._GC-01-043-2-20
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
6._GC-01-043-2-20
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
7._GC-01-043-2-20
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
8._GC-01-043-2-20
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
9._GC-01-043-2-20
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
10._RB_37_[BRA]
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
11._RB_37_[BRA]
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
12._RB_37_[BRA]
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
13._RB_37_[BRA]
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
14._RB_37_[BRA]
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
15._RB_37_[BRA]
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
16._RB_37_[BRA]
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
17._GC-01-043-2-20
AGGGAATTAAGGCCTTGGCCAAGGX_XX_X
18._RB_37_[BRA]
AGGGAATTAAGG_TTGGCCAAGGX_XX_X
19._GC-01-043-2-20
AGGGAATTAAGG_TTGGCCAAGGX_XX_X
20._GC-01-043-2-20
AGGGAACCAAGG_TTGGCCAAGGX_XX_X
21._RB_37_[BRA]
AGGGAACCAAGG_TTGGCCAAGGX_XX_X
22._RB_37_[BRA]
AA_AACTAA_CC_GGACAAGGX_XX_X
23._RUQ_1705
____AA____AC__X_XX_X
24._RB_37_[BRA]
_GGAACTAA_CCCCGGACAAGGX_XX_X
25._RUQ_135
AAGGAACTAAGGCCCCGGACAAGGX_XX_X
26._GC-01-43-2-20
_GGAAAAAACCCCAACCCCAAGGX_XX_X
27._GC-01-43-2-20
_GGAAAAAACCCCAACCCCAAGGX_XX_X

Input profile: RB_37_[BRA]

 
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Mars Center for Cocoa Science, Brazil
Location: 1216 8
 Dapeng Zhang, 2016

1._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 9 > FP
 Dapeng Zhang, 2016

2._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

4._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

6._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

10._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 14 > F
 Dapeng Zhang, 2016

11._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 11 > F
 Dapeng Zhang, 2016

12._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 15
 Dapeng Zhang, 2016

13._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 13
 Dapeng Zhang, 2016

14._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 10
 Dapeng Zhang, 2016

15._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 6
 Dapeng Zhang, 2016

16._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

17._RB_37_[BRA] GC-01-043-2-20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

18._RB_37_[BRA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 16
 Dapeng Zhang, 2016

19._RB_37_[BRA] GC-01-043-2-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

20._RB_37_[BRA] GC-01-043-2-20

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._RB_37_[BRA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 2 > FP
 Dapeng Zhang, 2016

22._RB_37_[BRA]

84.7 %
36 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

23._RB_37_[BRA] RUQ_1705

84.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

24._RB_37_[BRA]

84.3 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

25._RB_37_[BRA] RUQ_135

82.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._RB_37_[BRA] GC-01-43-2-20

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 11 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

27._RB_37_[BRA] GC-01-43-2-20

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25